SNP Profiles of UF 667 View Data

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	AC	CT	CC	TT	GT	AT	AC	CT	AG	GG	AG	TT	AC
1._UF_667	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
2._RUQ_55	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
3._UF_667	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
4._UF_667	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
5._UF_667	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
6._UF_667	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
7._UF_667	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
8._UF_667	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
9._UF_667	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
10._UF_667	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
11._UF_667	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
12._RUQ_55	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
13._GC-01-029-2-06	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
14._GC-01-029-2-06	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
15._GC-01-029-2-06	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
16._GC-01-029-2-06	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
17._GC-01-029-2-06	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
18._GC-01-029-2-06	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
19._GC-01-029-2-06	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
20._GC-01-29-2-6	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
21._RUQ_55	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
22._UF_667	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
23._UF_667_Fld#_119_Plt#_1	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	AC	CC	AC	CT	AC	AG	CC	AT	AC	CC	TT	AG	CC
1._UF_667	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
2._RUQ_55	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
3._UF_667	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
4._UF_667	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
5._UF_667	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
6._UF_667	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
7._UF_667	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
8._UF_667	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
9._UF_667	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
10._UF_667	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
11._UF_667	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
12._RUQ_55	AG	_	_	_	_	CC	_	CC	_	AA	CC	_	_	_
13._GC-01-029-2-06	AG	_	_	_	_	CC	_	CC	_	AC	CC	_	_	_
14._GC-01-029-2-06	AG	_	_	_	_	CC	_	CC	_	AC	CC	_	_	_
15._GC-01-029-2-06	AG	_	_	_	_	CC	_	CC	_	AC	CC	_	_	_
16._GC-01-029-2-06	AG	_	_	_	_	CC	_	CC	_	AC	CC	_	_	_
17._GC-01-029-2-06	AG	_	_	_	_	CC	_	CC	_	AC	CC	_	_	_
18._GC-01-029-2-06	AG	_	_	_	_	CC	_	CC	_	AC	CC	_	_	_
19._GC-01-029-2-06	AG	_	_	_	_	CC	_	CC	_	AC	CC	_	_	_
20._GC-01-29-2-6	AG	_	_	_	_	CC	_	CC	_	AC	GG	_	_	_
21._RUQ_55	AG	_	_	_	_	CC	_	CC	_	AC	GG	_	_	_
22._UF_667	_	_	_	_	_	AA	_	CG	_	CC	_	_	_	_
23._UF_667_Fld#_119_Plt#_1	AA	_	_	_	_	AC	_	CG	_	AC	GG	_	_	_

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AG	CG	CT	GT	AG	CT	CT	AC	AA	TT	CG	AG	CG	AG
1._UF_667	AG	_	_	GT	_	_	_	_	_	_	CG	_	_	AG
2._RUQ_55	AG	_	_	GT	_	_	_	_	_	_	CG	_	_	AG
3._UF_667	AG	_	_	GT	_	_	_	_	_	_	CG	_	_	AG
4._UF_667	AG	_	_	GT	_	_	_	_	_	_	CG	_	_	AG
5._UF_667	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AG
6._UF_667	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AG
7._UF_667	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AG
8._UF_667	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AG
9._UF_667	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AG
10._UF_667	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AG
11._UF_667	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AG
12._RUQ_55	_	_	CT	GT	AG	_	_	AC	_	_	CG	-	_	AG
13._GC-01-029-2-06	GG	_	CT	GT	AG	_	_	AC	_	GG	CG	AG	_	AG
14._GC-01-029-2-06	GG	_	CT	GT	AG	_	_	AC	_	GG	CG	AG	_	AG
15._GC-01-029-2-06	GG	_	CT	GT	AG	_	_	AC	_	GG	CG	AG	_	AG
16._GC-01-029-2-06	GG	_	CT	GT	AG	_	_	AC	_	GG	CG	AG	_	AG
17._GC-01-029-2-06	GG	_	CT	GT	AG	_	_	AC	_	GG	CG	AG	_	AG
18._GC-01-029-2-06	GG	_	CT	GT	AG	_	_	AC	_	GG	CG	AG	_	AG
19._GC-01-029-2-06	GG	_	CT	GT	AG	_	_	AC	_	GG	CG	_	_	AG
20._GC-01-29-2-6	_	_	_	AC	AG	_	_	AC	_	CC	CG	AG	_	AG
21._RUQ_55	_	_	_	AC	AG	_	_	AC	_	CC	CG	AG	_	AG
22._UF_667	AA	_	_	GG	_	_	_	_	_	_	GG	_	_	AG
23._UF_667_Fld#_119_Plt#_1	_	_	_	CC	GG	_	_	CC	_	CG	GG	GG	_	AA

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CT	TT	AA	CC	AA	TT	CT	GT	AC	CC	GT	GG	TT	GG
1._UF_667	_	_	_	_	AA	_	CT	_	_	_	GT	_	_	_
2._RUQ_55	_	_	_	_	AA	_	CT	_	_	_	GT	_	_	_
3._UF_667	_	_	_	_	AA	_	CT	_	_	_	GT	_	_	_
4._UF_667	_	_	_	_	AA	_	CT	_	_	_	GT	_	_	_
5._UF_667	_	_	_	_	AA	_	CT	_	_	_	GT	_	_	_
6._UF_667	_	_	_	_	AA	_	CT	_	_	_	GT	_	_	_
7._UF_667	_	_	_	_	AA	_	CT	_	_	_	GT	_	_	_
8._UF_667	_	_	_	_	AA	_	CT	_	_	_	GT	_	_	_
9._UF_667	_	_	_	_	AA	_	CT	_	_	_	GT	_	_	_
10._UF_667	_	_	_	_	AA	_	CT	_	_	_	GT	_	_	_
11._UF_667	_	_	_	_	AA	_	CT	_	_	_	GT	_	_	_
12._RUQ_55	CC	_	_	_	_	_	_	_	_	_	GT	_	_	_
13._GC-01-029-2-06	CT	_	_	_	AA	_	CT	_	_	_	GT	_	_	_
14._GC-01-029-2-06	CT	_	_	_	AA	_	CT	_	_	_	GT	_	_	_
15._GC-01-029-2-06	CT	_	_	_	AA	_	CT	_	_	_	GT	_	_	_
16._GC-01-029-2-06	CT	_	_	_	AA	_	CT	_	_	_	GT	_	_	_
17._GC-01-029-2-06	CT	_	_	_	AA	_	CT	_	_	_	GT	_	_	_
18._GC-01-029-2-06	CT	_	_	_	AA	_	CT	_	_	_	GT	_	_	_
19._GC-01-029-2-06	CT	_	_	_	AA	_	CT	_	_	_	GT	_	_	_
20._GC-01-29-2-6	_	_	_	_	AA	_	_	_	_	_	AA	_	_	_
21._RUQ_55	_	_	_	_	AA	_	_	_	_	_	AA	_	_	_
22._UF_667	_	_	_	_	GG	_	CC	_	_	_	TT	_	_	_
23._UF_667_Fld#_119_Plt#_1	_	_	_	_	AG	_	_	_	_	_	AA	_	_	_

	57	58	59	60
_Input profile	GG	CG	CT	AT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._UF_667	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._RUQ_55	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._UF_667	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._UF_667	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._UF_667	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._UF_667	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._UF_667	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._UF_667	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._UF_667	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._UF_667	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._UF_667	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._RUQ_55	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._GC-01-029-2-06	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._GC-01-029-2-06	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._GC-01-029-2-06	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._GC-01-029-2-06	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._GC-01-029-2-06	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
18._GC-01-029-2-06	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
19._GC-01-029-2-06	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
20._GC-01-29-2-6	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
21._RUQ_55	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
22._UF_667	_	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
23._UF_667_Fld#_119_Plt#_1	_	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: UF_667 RUQ_55

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

1._UF_667

96.2 %
13 shared markers

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

2._UF_667 RUQ_55

96.2 %
13 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

3._UF_667

96.2 %
13 shared markers

View View all Clone Any

Malaysian Cocoa Board (MCB), Malaysia

Location: C0244

Dapeng Zhang, 2016

4._UF_667

96.2 %
13 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F466 T2

Dapeng Zhang, 2016

5._UF_667

92.3 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1206 10

Dapeng Zhang, 2016

6._UF_667

92.3 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1206 5 > FP

Dapeng Zhang, 2016

7._UF_667

92.3 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1206 11 > F

Dapeng Zhang, 2016

8._UF_667

92.3 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1206 1 > FP

Dapeng Zhang, 2016

9._UF_667

92.3 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1206 7

Dapeng Zhang, 2016

10._UF_667

92.3 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1206 3

Dapeng Zhang, 2016

11._UF_667

92.3 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1206 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

12._UF_667 RUQ_55

90.6 %
16 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

13._UF_667 GC-01-029-2-06

90.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11 > FP4

14._UF_667 GC-01-029-2-06

90.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

15._UF_667 GC-01-029-2-06

90.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

16._UF_667 GC-01-029-2-06

90.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP2

17._UF_667 GC-01-029-2-06

90.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

18._UF_667 GC-01-029-2-06

90.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

19._UF_667 GC-01-029-2-06

90 %
20 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

20._UF_667 GC-01-29-2-6

73.5 %
17 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 2, Rep: 6, Tree: 1 > FP1

Notes: Brazil_Selections_Poss_grandparent

21._UF_667 RUQ_55

73.5 %
17 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

22._UF_667

61.5 %
13 shared markers

View View all Clone Any

Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia

Location: KW 292 I-042

Dapeng Zhang, 2016

23._UF_667 UF_667_Fld#_119_Plt#_1

44.1 %
17 shared markers

View View all Clone Any

USDA-TARS, United States of America

Location: Field: 119, Tree: 1

Key to SNP Markers

Key to SNP Markers

1	TcSNP13	2	TcSNP19	3	TcSNP33	4	TcSNP49	5	TcSNP52
6	TcSNP131	7	TcSNP143	8	TcSNP144	9	TcSNP176	10	TcSNP189
11	TcSNP194	12	TcSNP230	13	TcSNP290	14	TcSNP305	15	TcSNP329
16	TcSNP363	17	TcSNP421	18	TcSNP519	19	TcSNP522	20	TcSNP529
21	TcSNP546	22	TcSNP577	23	TcSNP589	24	TcSNP591	25	TcSNP602
26	TcSNP640	27	TcSNP642	28	TcSNP644	29	TcSNP645	30	TcSNP660
31	TcSNP702	32	TcSNP723	33	TcSNP731	34	TcSNP739	35	TcSNP800
36	TcSNP823	37	TcSNP835	38	TcSNP836	39	TcSNP872	40	TcSNP899
41	TcSNP945	42	TcSNP998	43	TcSNP999	44	TcSNP1010	45	TcSNP1019
46	TcSNP1053	47	TcSNP1062	48	TcSNP1112	49	TcSNP1144	50	TcSNP1205
51	TcSNP1230	52	TcSNP1237	53	TcSNP1253	54	TcSNP1275	55	TcSNP1293
56	TcSNP1401	57	TcSNP1404	58	TcSNP1458	59	TcSNP1524	60	TcSNP1527